Organization (Networks & Collective Dynamics)
- Networks:
- Simple biological modules:
- Transcription regulation; lac operon
- Genetic switches
- Signal transduction
- Repressilator: a simple clock
- Statistics of complex networks:
- Random (Erdös-Rényi) networks
- Percolation, diameter, degree distribution
- Scale free networks, construction and properties
- Dynamics on networks:
- Fixed points and stability
- Cycles
- Biological patterns:
- Turing instability
- Cortical patterns
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