Organization (Networks & Collective Dynamics)

  1. Networks:
    • Simple biological modules:
      • Transcription regulation; lac operon
      • Genetic switches
      • Signal transduction
      • Repressilator: a simple clock
    • Statistics of complex networks:
      • Random (Erdös-Rényi) networks
      • Percolation, diameter, degree distribution
      • Scale free networks, construction and properties
  2. Dynamics on networks:
  3. Biological patterns:
    • Turing instability
    • Cortical patterns

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