1 | Introduction; Master equation | MK |
2 | Elements of population genetics | LM |
3 | Evolving populations (forward Kolmogorov) | MK |
4 | Population genetics (fitness, selection, ...) | LM |
5 | Fixation (backward Kolmogorov) | MK |
6 | Introduction to sequence alignment | LM |
7 | Algorithms for sequence alignment | LM |
8 | Significance of aligments (extreme value distributions) | MK |
9 | Ionic interactions | MK |
10 | Polymer theory 1, entropy elasticity, collapse | MK |
11 | Polymer theory 2, collapse, Random energy model | MK |
12 | Protein folding 1: elements of structure and forces | LM |
13 | Protein folding 2: evolved (designed) foldable proteins | LM |
14 | Protein folding 3: kinetics | LM |
15 | Protein folding 4: kinetics | LM |
16 | DNA (melting) | MK |
17 | RNA (secondary structure) | MK |
18 | Protein-DNA interactions 1: specific and non-specific binding | LM |
19 | Protein-DNA interactions 2: sequence-dependence & kinetics | LM |
20 | Microtubules | MK |
21 | Molecular motors & cell motility | MK |
22 | Introduction to networks | MK |
23 | Dynamics on networks 1 | MK |
24 | Dynamics on networks 2 | LM |
25 | Packing of DNA inside cells | LM |
26 | Cooperativity: hemoglobin and transcription factors | LM |