Calendar

Lec # Topics key dates
1 Introduction and Biological Databases
2 Rapid Database Search (Hashing)
3 Regulatory Motif Discovery (Combinatorial Search) Assignment 1 out
4 Probabilistic Motif Finding (Gibbs Sampling)
5 Sequence Alignment (Dynamic Programming) Assignment 1 due
6 Markov Chains and Hidden Markov Models
7 Gene Finding
8 Genome Evolution and Phylogenetic Trees Assignment 2 out
9 Genome Duplication
10 Gene Expression Clustering
11-12 Gene Network and Inference Assignment 2 due
13 Scale-free Networks Assignment 3 due
14 Comparative Genomics Assignment 4 due