Response to the Environment


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Video Clips

Video RealVideo®
5:11 minutes (17:49 - 23:00)

Antibodies in the blood recognize viral antigens and neutralize the virus.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
7:00 minutes (23:00 - 30:00)

Structure of antibodies-light chain, heavy chain, antigen binding site. Antibodies bind to antigens and neutralize the virus particle.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
13:20 minutes (30:00 - 43:20)

Antibodies must be specific to unknown, foreign particles. Each B cells/plasma cell clone produce and secrete a specific type of antibody.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
3:58 minutes (43:20 - 47:18)

Primary response versus secondary response. Secondary response is much faster and stronger due to memory cells from the primary response. This is the basis for vaccines.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
6:27 minutes (0:00 - 6:27)

Definitions of immunoglobulin, antigen, and epitope. External and internal epitopes on antigens can be recognized by antibodies. Recognition of antigen by antibody on the B cell induces the specific B cell to proliferate to produce more specific antibodies.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Antibody Production
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Video RealVideo®
11:17 minutes (6:27 - 17:44)

B cells make different antibodies with the same DNA sequence when various versions of V, D, and J DNA segments combine. Mistakes at the fusion point of the segments also contribute to the variability. Different light chains and heavy chains can combine and the antibody genes are more mutation prone.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Antibody Production
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Video RealVideo®
7:09 minutes (17:44 - 24:53)

Nonsense rearrangements must be eliminated. Antibody cannot react against native proteins (autoimmune disease). The body selectively stimulates B cells that make antibodies that tightly bind to and neutralizes the antigen.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Antibody Production
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Video RealVideo®
4:46 minutes (35:26 - 40:12)

Humoral immunity produces soluble antibody molecules and cellular immunity uses cytotoxic T cells to recognize and kill infected cells.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
10:05 minutes (40:12 - 50:17)

Macrophage internalizes foreign particles, presents small peptides on their surfaces, and induce production of specific T helper cells. Use example of bazaar to demonstrate interaction between MHCII of the macrophage and the T cell receptor of the T helper cell.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Other sections on immunology
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Video RealVideo®
3:58 minutes (1:27 - 5:25)

Macrophage internalizes foreign particles, presents small peptides on their surfaces, and induce production of specific T helper cells. Use example of bazaar to demonstrate interaction between MHCII of the macrophage and the T cell receptor of the T helper cell.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
8:16 minutes (5:25 - 13:41)

T helper cells interact with antibodies on the B cell to stimulate it to proliferate. The complex immune system activation involving macrophage, T cell, and B cell reduces the chance of autoimmunity.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Other immunology sections
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Video RealVideo®
9:33 minutes (1:27 - 11:00)

Different types of receptor neurons. Parts of an individual neuron - cell body, axon, axon hillock, nerve terminals, synapses.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
3:54 minutes (11:00 - 14:54)

Questions that arise in neurobiology.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
5:13 minutes (14:54 - 20:07)

Electrical and concentration gradients of ions are responsible for the action potential. Briefly mentions action potential, deplorization and repolarization.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
13:18 minutes (20:07 - 33:25)

Concentration gradients of Na+, K+, and Ca++ across the axon membrane are established by ion pumps embedded in the membrane. Energy driven pumps establish an electrical, concentration equilibrium that creates the resting potential at -70mV.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
7:20 minutes (33:35 - 40:55)

Voltage-gated Na+ and K+ ion channels create the action potential by depolarizing and repolarizing the membrane as ions move across the membrane based on the electrical gradients.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Electrical signals and concentration gradients
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Video RealVideo®
7:59 minutes (40:55 - 48:54)

Action potential is propagated along the axon by locally affecting potential of nearby membrane. Myelin sheathes made by Schwann cells allow faster transmission of the action potential.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
7:06 minutes (9:44 - 16:50)

In the pre-synaptic cell, action potential at the nerve terminal induces Ca++ to enter the cell, which helps release of neurotransmitters into the synapse.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Action potential
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Video RealVideo®
6:53 minutes (16:50 - 23:43)

Neurotransmitters bind to the ligand-gated Na+ ion channels on the post-synaptic cell and induces action potentials. Neurotransmitters are degraded when no longer needed.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Synaptic transmission
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Video RealVideo®
12:26 minutes (29:55 - 42:21)

Nerves can positively or negatively affect the post-synaptic cell. Information from thousands of nerve terminals are integrated at the axon hillock to produce a all-or-nothing action potential response.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Action potential, synaptic transmission, and post-synaptic cell
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Video RealVideo®
6:46 minutes (42:21 - 49:07)

Circuitry between sensory neuron, motor neuron, intermediate neurons, and muscle cell. The circuitry allow parts of the body to be coordinated when responding to the same stimulus.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Other sections on neurobiology
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Video RealVideo®
13:30 minutes (2:20 - 15:50)

Life cycle and infection of the polio virus. Jenner and his discovery of vaccine for polio. Vaccines can be made from heat attenuated or formaldehyde treated polio viruses.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Viral life cycle
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Video RealVideo®
34:25 minutes (15:38 - 50:03)

History of AIDS, discovery of HIV, life cycle, infection, and inhibitors of HIV.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Video RealVideo®
6:13 minutes (41:47 - 48:00)

Definition, origin, examples, and comparison. Heterotrophs such as humans cannot make certain amino acids and other essential compounds.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
7:42 minutes (42:31 - 50:13)

Overview and the four major characteristics of adaptive immunity - diversity, specificity, avoid self-recognition, and memory.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
3:11 minutes (3:15 - 6:26)

Comparison of the two types of immunity - characteristics, and cells and molecules involved.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: Adaptive immune system
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Video RealVideo®
12:40 minutes (6:26 - 19:06)

Structure, function, complementarity, and production. 3D molecular image. One plasma cell produces one antibody. Random combinations of various V, D, and J segments of the DNA results in many combinations that encodes different antibody proteins.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
6:57 minutes (19:06 - 26:03)

B cells display their antibody on the surface. Tight binding between the antibody and antigen stimulate the B cell to divide. Division gives rise to plamsa cells that produce antibodies, and memory cells, which are responsible for a faster secondary immune response.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: Antibodies
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Video RealVideo®
6:09 minutes (26:03 - 32:12)

Mechanisms and cells used to destroy pathogens - bacteria or virus.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: Antibodies
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Video RealVideo®
8:48 minutes (32:12 - 41:00)

T cells that recognize foreign peptides displayed by other cells on their major histocompatibility complex (MHC). Cytotoxic T cells kill infected cells; helper T cells activate B cells.

Prior Knowledge: None
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Video RealVideo®
6:25 minutes (41:00 - 47:25)

Education of immune cells in the thymus. All cells that react to self peptides are killed. Examples of autoimmunity.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Lecture Notes

Document PDF
All Pages

Structure, diversity, and function of antibodies. Production of antibodies through VDJ recombination and the cell types involved. Clonal expansion, and primary and secondary immune responses.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF
All Pages

Summary of history of AIDS, consequences, and symptoms. Life cycle and infection by HIV and compromised immune system.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Practice Problems

Document PDF#
Problem 1 (page 1)

Immune response to viral infections and how viruses try to evade the system.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF#
Problems 2, 3 (page 2)

Antibodies as transmembrane receptors that induce B cell proliferation post infection. Memory B cells responsible for rapid second immune response.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF#
Problem 1 (page 1)

Parts and function of the neuron. Ion channels, their state (open, closed, inactivated), and contribution to the action potential.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF#
Problem 2 (page 4)

Secretion, function, and reduction of neurotransmitters in the synapse.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF
Problems 3a-3d (page 6)

The concentrations of ions and types of channels responsible for the resting potential.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF
Problems 3e-3j (page 6)

Channels permeability and ion movement during the action potential.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF
Problem 3a (page 8)

Define the resting potential and how it is maintained in a neuron.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF
Problems 4b-4c (page 8)

States of various channels during an action potential and the effect of defective mutant channels on the shape of an action potential.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF
Problems 2a-2d (page 4)

The process of transmitting an action potential from one neuron to the next. Ligands and receptors involved in the process and the affect of receptor up-regulation.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF#
Problem 3 (page 6)

Cells that contain MHCI and MHCII and the peptides presented by the MHC molecules.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF#
Problems 4a-4f (page 7)

Quantitative calculation of the result of VDJ recombination that creates antibodies, and B and T cell receptors.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF#
Problems 4g-4i (page 8)

Fate of immature and mature T cells that recognize foreign and self antigens.

Instructors: Prof. Tyler Jacks, Prof. Hazel Sive
Prior Knowledge: None
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Document PDF
Problem A (page 1)

Identifying antibody structures and ways to generate diversity.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem 2 (page 1)

Humoral and cellular immune responses involving B cells, T cells, and macrophage. Functions of various molecules. Purpose and function of vaccines.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Use with sections on immunology
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Document PDF#
Problems C, D (page 1)

Humoral and cellular immune responses involving B cells, T cells, and macrophage. Functions of various molecules. Purpose and function of vaccines.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Use with sections on immunology
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HIV

Document PDF
All problems (page 1)

Comprehensive review of the structure, life cycle, and infection of the human immunodeficiency virus.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Use with AIDS sections
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Document PDF#
All problems (page 1)

Fill in the blank questions on the basics of immunology - cell types, molecules, humoral response and cellular response.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Use with immunology sections
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Document PDF
All problems (page 1)

Action potential, voltage, and various states of ion pumps and channels. Neurotransmitters and chemical synapse.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Use with neurobiology sections
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Document PDF
All problems (page 1)

Action potential, voltage, and various states of ion pumps and channels. Neurotransmitters and chemical synapse.

Prior Knowledge: Use with neurobiology sections
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Document PDF
All problems (page 1)

Action potential, voltage, and various states of ion pumps and channels. Neurotransmitters and chemical synapse.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Use with neurobiology sections
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Document PDF
Problem A (page 1)

Diagram for different parts of a gene encoding an antibody showing variation produced by VDJ DNA rearrangement and alternative splicing. Antibody structure and memory B cell.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem B (page 2)

Cells and molecules involved in an immune response to viral infection. Pros and cons of vaccinating against chickenpox.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem C (page 3)

Biochemical interactions between antibody and antigen, and DNA mutations that strengthen or weaken these interactions.

Prior Knowledge: None
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Exam Questions

Document PDF#
Problem 1 (page 2)

Cell types, molecules, and functions of innate, humoral, and cellular immunity.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF#
Problem 3 (page 5)

Production and use of vaccine. Causes of antibody diversity.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF#
Problem 10 (page 15)

Ion channels involved in the action potential and changes in the potential across the axon membrane. Signal transmission at the synapse between two neurons.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF
Problem 7 (page 11)

True or false questions about functions of cells in the immune system. Production of antibodies against protein from a different species.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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