Fermentation & Cellular Respiration


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Video Clips

Video RealVideo®
4:05 minutes (43:57 - 48:02)

NADH and FADH are used to pump protons out of the intermembrane space of the mitochondria. Proton gradient results in energy that makes ATP.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Follows from previous sections on glycolysis, krebs, and aerobic respiration
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Video RealVideo®
22:34 minutes (18:07 - 40:41)

Using steps of glycolysis to demonstrate energetics of a multistep pathway. The process involves consuming and generating ATP, pyruvate and NADH. Krebs cycle uses pyruvate from glycolysis and oxygen to make NADH, FADH, and ATP.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Builds on the previous section
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Video RealVideo®
3:16 minutes (40:41 - 43:57)

Anaerobic and aerobic conditions produce different amounts of energy in terms of ATP.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: Follows from previous section on glycolysis and krebs cycle
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Video RealVideo®
7:02 minutes (8:25 - 15:27)

Study of conversion of glucose to ethanol and carbon dioxide in wine-making.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
17:58 minutes (19:52 - 37:50)

Chemical reaction to convert glucose to pyruvate, ATP, and NADH. Detailed enzymatic conversions, names, structures, and energy production shown.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
4:36 minutes (37:50 - 42:26)

Under anaerobic conditions, pyruvate is converted into lactic acid or carbon dioxide and ethanol to recycle NADH from glycolysis.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
5:49 minutes (4:04 - 9:53)

Broad review of glycolysis and pyruvate conversion under anaerobic conditions.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
3:11 minutes (9:53 - 13:04)

Citric acid cycle/Krebs cycle and oxidative phosphorylation with pyruvate as the starting point. Produces many ATP molecules.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
11:52 minutes (13:04 - 24:56)

Interconvertible forms of energy-chemical bond, concentration gradient, and electrical gradient. Example: Proton gradient across the membrane (concentration gradient energy) can make ATP (chemical bond energy).

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: Gradients
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Video RealVideo®
7:22 minutes (24:56 - 32:18)

During aerobic respiration, NADH and oxygen are converted to water and carbon dioxide. Energetics of the stepwise reactions that create a proton gradient which drives the production of ATP molecules.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
6:24 minutes (32:18 - 38:42)

Glycolysis occurs in the cytoplasm while oxidative phosphorylation and citric acid cycle occur in the mitochondria. Mitochondrion structure, membrane, proteins/enzymes, and function in respiration.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
4:37 minutes (38:42 - 43:19)

Conversion of pyruvate and other intermediates of glycolysis into fatty acids for energy storage.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
3:00 minutes (43:19 - 46:19)

Choice of aerobic and anaerobic respiration. Glycolysis needs to occur 18 times faster during aerobic respiration. Yeast regulates rate of glycolysis based on level of ATP/ADP.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Video RealVideo®
5:36 minutes (27:14 - 32:50)

Respiration uses organic carbon source to make energy (ATP) and reducing power (NADH); reverse of photosynthesis and chemosynthesis. Terminal electron acceptors include: Oxygen, nitrate, sulfate, carbon dioxide, Fe3+, and Mn3+.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Lecture Notes

Document PDF#
Page 3 to page 4

Use glycolysis as an illustration of chemical reactions. Emphasis on the production of ATP as an energy currency.

Instructors: Prof. Eric Lander, Prof. Robert Weinberg, Dr. Claudette Gardel
Prior Knowledge: None
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Document PDF
Page 2 to page 4

Steps, intermediates, enzymes, ATP, and NADH involved in glycolysis.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Page 5

Structures and conversions between ADP and ATP, and between NAD+ and NADH.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Page 7

Steps in electron transport and ATP synthesis from proton gradient.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Page 1 to page 2

Classification of organisms based on carbon source, energy source, and electron donor. Name, definition and examples from each class.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Page 4

Biochemical reactions involved for autotrophs including: Fermentation and respiration.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Practice Problems

Document PDF
Problem 3 (page 6)

Energy diagram and intermediate compounds of all steps of glycolysis. Several steps use ATP as energy source while others harvest and store energy.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem 1 (page 1)

Various compounds used as electron donors and acceptors in respiration and chemosynthesis.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem C (page 3)

Evolution and efficiency of aerobic respiration. Schematic of mitochondria and the electron transport chain.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem A (page 1)

Carbon and energy sources, and processes that produce carbon and electron sources.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem B (page 2)

Examples of three types of bacteria characterized based on requirements of light, carbon source, and electron source.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Exam Questions

Document PDF
Problem 2 (page 5)

Carbon and electron sources for processes in respiration and photosynthesis. Energy storage in bonds for coupled reactions. Includes good diagrams of chemical reactions in glycolysis and the Krebs cycle.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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Document PDF
Problem 1 (page 2)

Carbon, electron and energy sources for processes in respiration and photosynthesis.

Instructors: Prof. Penny Chisholm, Prof. Graham Walker, Dr. Julia Khodor, Dr. Michelle Mischke
Prior Knowledge: None
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